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boot scanning analysis simplot v3.5.1  (Simplot Science)

 
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    Simplot Science boot scanning analysis simplot v3.5.1
    Recombination events and breakpoints identified in NACMR092. (A) Recombinant breakpoint positions were calculated by boot scanning analysis using Simplot <t>v3.5.1,</t> as described. The percentages of permuted trees (y-axis) of the subtypes at each sequence position (x-axis) are shown. (B) Genomic map of the near-full-length sequence of NACMR092 (based on HXB2 numbering). The mosaic map was generated using the Los Alamos Recombinant HIV-1 Drawing Tool (https://hiv.lanl.gov/content/sequence/DRAW_CRF/recom_mapper.html). The start (nucleotide 874) and end (nucleotide 9403) of the near-full-length sequence, as well as the breakpoints are shown. Genomic sequences originating from HIV-1 subtype A1 (grey color), CRF01_AE (red color), and CRF02_AG (blue color) are shown. LTR, long-terminal repeat; gag, group-specific antigen; pol, polymerase; vif, viral infectivity factor; vpr, viral protein R; vpu, viral protein U; env, envelope; tat, trans-activator of transcription; nef, negative factor. Color images are available online.
    Boot Scanning Analysis Simplot V3.5.1, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/boot scanning analysis simplot v3.5.1/product/Simplot Science
    Average 90 stars, based on 1 article reviews
    boot scanning analysis simplot v3.5.1 - by Bioz Stars, 2026-04
    90/100 stars

    Images

    1) Product Images from "Near-Full-Length Genetic Characterization of a Novel HIV-1 Unique Recombinant with Similarities to A1, CRF01_AE, and CRFO2_AG Viruses in Yaoundé, Cameroon"

    Article Title: Near-Full-Length Genetic Characterization of a Novel HIV-1 Unique Recombinant with Similarities to A1, CRF01_AE, and CRFO2_AG Viruses in Yaoundé, Cameroon

    Journal: AIDS Research and Human Retroviruses

    doi: 10.1089/aid.2019.0042

    Recombination events and breakpoints identified in NACMR092. (A) Recombinant breakpoint positions were calculated by boot scanning analysis using Simplot v3.5.1, as described. The percentages of permuted trees (y-axis) of the subtypes at each sequence position (x-axis) are shown. (B) Genomic map of the near-full-length sequence of NACMR092 (based on HXB2 numbering). The mosaic map was generated using the Los Alamos Recombinant HIV-1 Drawing Tool (https://hiv.lanl.gov/content/sequence/DRAW_CRF/recom_mapper.html). The start (nucleotide 874) and end (nucleotide 9403) of the near-full-length sequence, as well as the breakpoints are shown. Genomic sequences originating from HIV-1 subtype A1 (grey color), CRF01_AE (red color), and CRF02_AG (blue color) are shown. LTR, long-terminal repeat; gag, group-specific antigen; pol, polymerase; vif, viral infectivity factor; vpr, viral protein R; vpu, viral protein U; env, envelope; tat, trans-activator of transcription; nef, negative factor. Color images are available online.
    Figure Legend Snippet: Recombination events and breakpoints identified in NACMR092. (A) Recombinant breakpoint positions were calculated by boot scanning analysis using Simplot v3.5.1, as described. The percentages of permuted trees (y-axis) of the subtypes at each sequence position (x-axis) are shown. (B) Genomic map of the near-full-length sequence of NACMR092 (based on HXB2 numbering). The mosaic map was generated using the Los Alamos Recombinant HIV-1 Drawing Tool (https://hiv.lanl.gov/content/sequence/DRAW_CRF/recom_mapper.html). The start (nucleotide 874) and end (nucleotide 9403) of the near-full-length sequence, as well as the breakpoints are shown. Genomic sequences originating from HIV-1 subtype A1 (grey color), CRF01_AE (red color), and CRF02_AG (blue color) are shown. LTR, long-terminal repeat; gag, group-specific antigen; pol, polymerase; vif, viral infectivity factor; vpr, viral protein R; vpu, viral protein U; env, envelope; tat, trans-activator of transcription; nef, negative factor. Color images are available online.

    Techniques Used: Recombinant, Sequencing, Generated, Genomic Sequencing, Infection



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    boot scanning analysis simplot v3.5.1  (Simplot Science)
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    Simplot Science boot scanning analysis simplot v3.5.1
    Recombination events and breakpoints identified in NACMR092. (A) Recombinant breakpoint positions were calculated by boot scanning analysis using Simplot <t>v3.5.1,</t> as described. The percentages of permuted trees (y-axis) of the subtypes at each sequence position (x-axis) are shown. (B) Genomic map of the near-full-length sequence of NACMR092 (based on HXB2 numbering). The mosaic map was generated using the Los Alamos Recombinant HIV-1 Drawing Tool (https://hiv.lanl.gov/content/sequence/DRAW_CRF/recom_mapper.html). The start (nucleotide 874) and end (nucleotide 9403) of the near-full-length sequence, as well as the breakpoints are shown. Genomic sequences originating from HIV-1 subtype A1 (grey color), CRF01_AE (red color), and CRF02_AG (blue color) are shown. LTR, long-terminal repeat; gag, group-specific antigen; pol, polymerase; vif, viral infectivity factor; vpr, viral protein R; vpu, viral protein U; env, envelope; tat, trans-activator of transcription; nef, negative factor. Color images are available online.
    Boot Scanning Analysis Simplot V3.5.1, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/boot scanning analysis simplot v3.5.1/product/Simplot Science
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    boot scanning analysis with simplot v3.5.1  (Simplot Science)
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    Simplot Science boot scanning analysis with simplot v3.5.1
    Recombination events and breakpoints identified in NACMR092. (A) Recombinant breakpoint positions were calculated by boot scanning analysis using Simplot <t>v3.5.1,</t> as described. The percentages of permuted trees (y-axis) of the subtypes at each sequence position (x-axis) are shown. (B) Genomic map of the near-full-length sequence of NACMR092 (based on HXB2 numbering). The mosaic map was generated using the Los Alamos Recombinant HIV-1 Drawing Tool (https://hiv.lanl.gov/content/sequence/DRAW_CRF/recom_mapper.html). The start (nucleotide 874) and end (nucleotide 9403) of the near-full-length sequence, as well as the breakpoints are shown. Genomic sequences originating from HIV-1 subtype A1 (grey color), CRF01_AE (red color), and CRF02_AG (blue color) are shown. LTR, long-terminal repeat; gag, group-specific antigen; pol, polymerase; vif, viral infectivity factor; vpr, viral protein R; vpu, viral protein U; env, envelope; tat, trans-activator of transcription; nef, negative factor. Color images are available online.
    Boot Scanning Analysis With Simplot V3.5.1, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/boot scanning analysis with simplot v3.5.1/product/Simplot Science
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    Image Search Results


    Recombination events and breakpoints identified in NACMR092. (A) Recombinant breakpoint positions were calculated by boot scanning analysis using Simplot v3.5.1, as described. The percentages of permuted trees (y-axis) of the subtypes at each sequence position (x-axis) are shown. (B) Genomic map of the near-full-length sequence of NACMR092 (based on HXB2 numbering). The mosaic map was generated using the Los Alamos Recombinant HIV-1 Drawing Tool (https://hiv.lanl.gov/content/sequence/DRAW_CRF/recom_mapper.html). The start (nucleotide 874) and end (nucleotide 9403) of the near-full-length sequence, as well as the breakpoints are shown. Genomic sequences originating from HIV-1 subtype A1 (grey color), CRF01_AE (red color), and CRF02_AG (blue color) are shown. LTR, long-terminal repeat; gag, group-specific antigen; pol, polymerase; vif, viral infectivity factor; vpr, viral protein R; vpu, viral protein U; env, envelope; tat, trans-activator of transcription; nef, negative factor. Color images are available online.

    Journal: AIDS Research and Human Retroviruses

    Article Title: Near-Full-Length Genetic Characterization of a Novel HIV-1 Unique Recombinant with Similarities to A1, CRF01_AE, and CRFO2_AG Viruses in Yaoundé, Cameroon

    doi: 10.1089/aid.2019.0042

    Figure Lengend Snippet: Recombination events and breakpoints identified in NACMR092. (A) Recombinant breakpoint positions were calculated by boot scanning analysis using Simplot v3.5.1, as described. The percentages of permuted trees (y-axis) of the subtypes at each sequence position (x-axis) are shown. (B) Genomic map of the near-full-length sequence of NACMR092 (based on HXB2 numbering). The mosaic map was generated using the Los Alamos Recombinant HIV-1 Drawing Tool (https://hiv.lanl.gov/content/sequence/DRAW_CRF/recom_mapper.html). The start (nucleotide 874) and end (nucleotide 9403) of the near-full-length sequence, as well as the breakpoints are shown. Genomic sequences originating from HIV-1 subtype A1 (grey color), CRF01_AE (red color), and CRF02_AG (blue color) are shown. LTR, long-terminal repeat; gag, group-specific antigen; pol, polymerase; vif, viral infectivity factor; vpr, viral protein R; vpu, viral protein U; env, envelope; tat, trans-activator of transcription; nef, negative factor. Color images are available online.

    Article Snippet: Fragments I, II, III, IV, V, VI, VII, VIII, and IX of the mosaic genome correspond, respectively, to nucleotides 874–1526, 1527–1826, 1827–5029, 5030–5629, 5630–6629, 6630–6862, 6863–8862, 8863–9106, and nucleotides 9107–9403 of the HXB2 genome. fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window FIG. 2. caption a7 Recombination events and breakpoints identified in NACMR092. (A) Recombinant breakpoint positions were calculated by boot scanning analysis using Simplot v3.5.1, as described.

    Techniques: Recombinant, Sequencing, Generated, Genomic Sequencing, Infection